Substituted macrocycles

A recent study, lead by Florian Glöcklhofer from Imperial College London, explores the effect of methoxy and thiomethyl subtitutions on a formally antiaromatic macrocycle. The corresponding paper “[]Paracyclophanetetraenes (PCTs): cyclic structural analogues of poly(p‑phenylene vinylene)s (PPVs)” is available via Open Research Europe, 1, 111, 2012.

The above figure compares the orbitals and aromaticity descriptors for different charge and spin states. Importantly, the symmetry is broken in the T1 state, inhibiting Baird aromaticity. By comparison, the symmetry is retained for the neutral singlet, dianion, and dication states all of which exhibit aromaticity.

Conjugated macrocycles

A recent study led by F. Glöcklhofer from Imperial College, London, investigates the properties of substituted conjugated macrocycles. The first (pre-review) version just appeared on Open Research Europe:

[]Paracyclophanetetraenes (PCTs): cyclic structural analogues of poly(p‑phenylene vinylene)s (PPVs) by M. Pletzer, F. Plasser, M. Rimmele, M. Heeney, and F. Glöcklhofer.

Computations reveal the local and global aromaticity of the macrocycles in various electronic states by using the VIST method along with a discussion of the nodal structures of the orbitals.

Dominant natural difference orbitals (NDOs) (blue/red for electron detachment; green/orange for attachment) for different electronic states of O-PCT (C2 rotamer) and VIST plots for the S0 and T1 states at the S1 geometry. Copyright 2021 Pletzer M. et al. (CC-BY 4.0).

Visualisation of Aromaticity and Antiaromaticity

Dylan has finished his MChem project entitled “Visualisation of Aromaticity and Antiaromaticity via the Computation of the Chemical Shielding on Multi-Dimensional Grids.” You can find his report here. The purpose of his project was to develop a convenient method for computing shielding tensors on a grid around a molecule. The developed code is available via github.

Below, an analysis of biphenylene is shown in the singlet (a) and triplet (b) state. For the singlet this representation highlights the aromaticity (red) of the benzene rings whereas the central 4-membered ring is found to be antiaromatic (blue). In the triplet (b), the whole molecule is found to be aromatic (red) according to Baird’s rule.

An analysis of norcorrole using either its doubly protonated form (a) or a nickel complex (b) highlights the antiaromaticity at the centre of this molecule whereas an aromatic pathway is found at the perimeter (see also [P. B. Karadakov, Org. Lett. 2020, 22, 8676]).

For more examples of how this type of analysis is used in the literature, see e.g., [Angew. Chemie – Int. Ed. 2020, 59, 19275] and [ChemPhysChem 2021, 22, 741].

Antiaromatic macrocycles

How do macrocycles with [4n] electrons behave? Are there signatures of their formal antiaromaticity and how can their properties be tuned for practical applications? A recent study, led by Florian Glöcklhofer (Imperial College, London) endeavours to tackle these questions. A set of macrocycles based on []cyclophanetetraenes was synthesised, their redox and optical properties were measured, and a detailed computational analysis was performed.

Clear signatures of the unique properties of these macrocycles was found considering their large Stokes shifts (>1.5 eV) along with the ease of producing doubly charged states. A detailed computational analysis traces these properties back to the aromaticity of the excited and doubly charged states, respectively. In addition, it is illustrated how the properties of the macrocycles can be systematically varied with introduction of functional groups and variation of the aromatic units.

The study just appeared as a preprint on ChemRxiv: Functional Group Introduction and Aromatic Unit Variation in a Set of π-Conjugated Macrocycles: Revealing the Central Role of Local and Global Aromaticity.

Below, electron density difference plots for the charged states of the parent molecule paracyclophanetetraene are shown highlighting the cyclic symmetry of the electron attachment. The 2+/2- and 6+/6- states are aromatic whereas the 4+/4- singlet states are antiaromatic.

Release of TheoDORE 2.4

Version 2.4 of the TheoDORE wavefunction analysis package is available. Download the current version below.

New features of TheoDORE 2.4:

TheoDORE – Download

Download the newest release of the TheoDORE wavefunction analysis program – TheoDORE 2.4 (22 April 2021)

Size: 12 MB
Version: 2.4

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Baird aromaticity

Can you sort these molecules according to increasing triplet excitation energies?

Some basic considerations might suggest that energies go down as the size of the molecule increases. But this is incorrect. The decisive feature of these molecules is their ground-state antiaromaticity along with their potential for excited-state Baird aromaticity. Triplet excitation energies increase sharply going from 1 (0.1 eV) via 2 (1.9 eV) to 3 (2.6 eV). This can be understood in the sense that antiaromaticity is blurred as the molecule becomes larger.

More strikingly, when going from 3 to 4 or 5, the energy drops again dramatically down to 1.0 eV. This effect is explained following Ayub et al. by the simple fact that these molecule possess resonance structures with simultaneous quartets and sextets.

In a recent paper, Exploitation of Baird Aromaticity and Clar’s Rule for Tuning the Triplet Energies of Polycyclic Aromatic Hydrocarbons, we investigate these phenomena in detail using a recently developed method for the visualisation of chemical shielding tensors (VIST) along with an analysis of natural transition orbitals. In addition, a model for rationalising the dia- and paramagnetic shielding effects observed in (anti)aromatic systems is presented.

See also TCA, 2020, 139, 113 on a discussion of related bipenylene derivatives.

3D visualisation of chemical shielding tensors

Aromaticity is a ubiquitous yet elusive concept in chemistry and chemists have spent a great deal of effort on developing methods to quantify and visualise aromaticity. One particularly popular method is the nucleus independent shift (NICS), which can be seen as a virtual NMR experiment carried out within a conjugated ring to evaluate the enhanced chemical shielding induced by aromatic ring-currents. Strikingly NICS also allows to quantify antiaromaticity, as this induces a net deshielding effect within the ring. NICS provides a powerful quantitative aromaticity criterion but the main challenge for its graphical representation is that the chemical shielding is a 3×3 tensor, which is difficult to visualise with the existing methods.

Therefore, we have developed a new method for the visualisation of chemical shielding tensors (VIST), which provides a local representation of the shielding tensor along with the molecular structure. The method, thus, allows to probe local aromaticity along with the underlying anisotropy of the shielding. The method is described in the preprint “3D Visualisation of chemical shielding tensors to elucidate aromaticity and antiaromaticity” available on ChemRxiv.

Within the preprent we exemplify the main concepts in the benzene and phenanthrene molecules and continue by studying

The underlying code is scheduled to be released within the next version of the TheoDORE wavefunction analysis package.